MNL - ENI

C$ 206 Find Cheap Flights from Manila to El Nido – Compare and Save

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Everything you should know

Cheapest round-trip
C$ 456
Typical prices: C$ 294-C$ 463
Multiple Airlines
Tue 2/10Fri 5/10
MNL - ENI • 1 stop
Cheapest one-way flights
C$ 206
Typical prices: C$ 167-C$ 279
Multiple Airlines
Fri 2/2
MNL - ENI • 1 stop
Avoid delays
Cebu Pacific
Most punctual • 94% on-time
Morning
Best time • Fewest delays
Insights
Insights
When to book
24 weeks
in advance
Our data shows that travellers who book at least 24 weeks in advance save around 34% compared to booking last minute.
Insights
Insights
When to travel
September
Cheapest • 15% price drop
December
Most popular
Good to know
+1
Good to know
+1
Top layover airports
Boracay Godofredo P. Ramos (MPH)
Cheapest • Avg C$ 433 (round-trip)
Cebu City Mactan Intl (CEB)
Shortest trip • 5h 01m (one-way)
Insights
Insights
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We hope you enjoy your trip to El Nido!
Flight Deals
Booking Insights
Flight Deals

Cheap Flights from Manila to El Nido (MNL-ENI)

 
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Manila to El Nido

Fri, 2 Oct - Mon, 5 Oct
Multiple Airlines Logo
10:15 a.m. - 5:00 p.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 45m1 stop Boracay Godofredo P. Ramos
Multiple Airlines Logo
6:50 a.m. - 11:50 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
17h 00m1 stop Cebu City Mactan Intl
C$ 456Multiple Airlines
Fri, 23 Oct - Wed, 28 Oct
Multiple Airlines Logo
10:45 a.m. - 8:50 p.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
10h 05m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
1:35 p.m. - 10:10 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
8h 35m1 stop Bohol–Panglao Intl
C$ 466Multiple Airlines
Tue, 2 Feb - Fri, 5 Feb
Multiple Airlines Logo
10:20 p.m. - 6:00 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
7h 40m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
10:45 a.m. - 8:00 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
9h 15m1 stop Cebu City Mactan Intl
C$ 470Multiple Airlines
Sat, 7 Nov - Sun, 8 Nov
Multiple Airlines Logo
7:25 p.m. - 6:00 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
10h 35m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
4:40 p.m. - 3:45 a.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
11h 05m1 stop Cebu City Mactan Intl
C$ 477Multiple Airlines
Thu, 1 Oct - Mon, 5 Oct
Multiple Airlines Logo
12:00 a.m. - 2:00 p.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
14h 00m2 stops Cebu City Mactan Intl Busuanga
Multiple Airlines Logo
2:25 p.m. - 5:45 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
3h 20m1 stop Boracay Godofredo P. Ramos
C$ 480Multiple Airlines
Sat, 7 Nov - Sun, 8 Nov
Multiple Airlines Logo
7:20 a.m. - 1:45 p.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 25m2 stops Cebu City Mactan Intl Busuanga
Multiple Airlines Logo
4:40 p.m. - 2:20 a.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
9h 40m1 stop Cebu City Mactan Intl
C$ 484Multiple Airlines
Thu, 22 Oct - Tue, 27 Oct
Multiple Airlines Logo
3:50 a.m. - 11:10 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
7h 20m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
4:40 p.m. - 3:45 a.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
11h 05m1 stop Cebu City Mactan Intl
C$ 503Multiple Airlines
Tue, 2 Feb - Fri, 5 Feb
Multiple Airlines Logo
12:10 p.m. - 5:20 p.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
5h 10m1 stop Boracay Godofredo P. Ramos
Multiple Airlines Logo
3:55 p.m. - 8:00 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
4h 05m1 stop Cebu City Mactan Intl
C$ 510Multiple Airlines
Tue, 2 Feb - Fri, 5 Feb
Multiple Airlines Logo
6:05 a.m. - 10:25 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
4h 20m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
3:55 p.m. - 2:20 a.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
10h 25m1 stop Cebu City Mactan Intl
C$ 512Multiple Airlines
Mon, 4 Jan - Fri, 8 Jan
Multiple Airlines Logo
8:35 p.m. - 6:00 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
9h 25m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
4:40 p.m. - 11:55 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
7h 15m1 stop Cebu City Mactan Intl
C$ 541Multiple Airlines
Booking Insights

Price, demand, and travel trends for Manila to El Nido flights

Use KAYAK data on prices, travel dates, airlines, and seasonal trends to compare options and book flights from Manila to El Nido with more confidence.

What's the cheapest day of the week to fly from Manila to El Nido?

Thursday is the cheapest day of the week to fly from Manila to El Nido and is 2% cheaper than the average day. Saturday is the most expensive day with flight prices 1% higher than average. Based on deals found by KAYAK users in the last 12 months.

What is the cheapest month to fly from Manila to El Nido?

•September is the cheapest month to fly from Manila to El Nido at C$ 294 round-trip.
•December (C$ 408) and May (C$ 385) are the most expensive months.
•The price difference between flying in the cheapest and most expensive months is 39% on average.
This is based on KAYAK aggregated and averaged internal data over the past 12 months.

When are prices from Manila to El Nido the cheapest?

Flights from Manila to El Nido are cheapest 24 weeks before departure. Booking in this window typically costs about 34% less than the average last-minute fare (within 2 weeks of the flight), based on KAYAK data.

Find deals

Key details for Manila to El Nido flights

Low season

July

Cheapest flight

C$ 206
Best time to beat the crowds but there is an average 6% increase in price.
Most popular time to fly (18% more expensive on average)
Flights from Manila to El Nido

When to book flights from Manila to El Nido

Are your dates flexible? Find out the best times to travel from Manila to El Nido based on our flight data from the last year. Discover the cheapest month and even day to fly.
Estimated round-trip price

Your Manila to El Nido flight questions, answered

Find helpful route details based on KAYAK data, including flight times, airports, airlines, and booking questions.

  • Which cabin classes can I book on flights from Manila to El Nido?

    Only Economy Class is available on flights from Manila to El Nido.

  • How long does a flight from Manila to El Nido take?

    There are currently no direct flights available from Manila to El Nido. Flights with 1 layover take between 4h 27m and 8h 04m in total, depending on the connection.

  • Do I need a passport to fly from Manila to El Nido?

    No, a passport is not required for this domestic route, but you will need a real ID-compliant driver's license, a state ID, or another TSA-accepted form of identification.

  • How much should I expect to pay for a Manila to El Nido flight?

    Round-trip flights from Manila to El Nido range from C$ 294 to C$ 463, with an average of C$ 347 over the past 12 months. Anything below C$ 294 counts as a good deal.

  • How expensive are last-minute Manila to El Nido flights?

    Last-minute fares on this route – booked within 2 weeks of departure – run 17% above the route average of C$ 347. Book 24 weeks before departure for the lowest fares.

  • How much can I save by taking a layover when flying from Manila to El Nido?

    On this route, direct flights are cheaper than layover options on average. Direct fares average C$ 330 round-trip, compared to C$ 433 via a layover through Boracay Godofredo P. Ramos (MPH).

  • Which aircraft model is used most often on flights from Manila to El Nido?

    The ATR 42 / ATR 72 family is used most often on this route, operated mainly by AirSWIFT. Other aircraft seen on the route include Airbus A320-100/200 variants.

  • Have flight prices from Manila to El Nido changed much recently?

    Yes. Based on fares seen in the past 5 days, round-trip prices on this route varied from about C$ 456 to C$ 832. That means the highest observed fare was about 82% higher than the lowest one.

  • How are flight prices from Manila to El Nido looking right now?

    One-way fares from Manila to El Nido are currently higher than usual. Average one-way flight prices are about C$ 230, which is 5% above the typical average for this route.

  • Which airports can I use when flying from Manila to El Nido?

    Flights from Manila to El Nido usually depart from Manila Ninoy Aquino Intl (MNL) and arrive at El Nido (ENI).

  • How do delay rates compare for morning and evening flights from Manila to El Nido?

    Morning flights have the fewest delays on this route. Delays tend to pile up throughout the day as one late flight pushes the next, so earlier departures are usually more reliable.

  • At what point is a flight considered delayed on the route from Manila to El Nido?

    A flight is considered delayed when it departs 15 minutes or more after its scheduled time. This is the standard used by the US Department of Transportation and most airline industry reporting. On the Manila to El Nido route, 12% of flights were delayed in the past 3 months, with delays averaging 1 hour 36 minutes.

  • Which airports do connecting flights from Manila to El Nido pass through?

    One-stop flights from Manila to El Nido most commonly connect through:

    • Cebu City Mactan Intl (CEB) – 87% of one-stop connections
    • Boracay Godofredo P. Ramos (MPH) – 11% of one-stop connections
    • Bohol–Panglao Intl (TAG) – 2% of one-stop connections

    Cebu City Mactan Intl (CEB) handles the largest share of one-stop connections on this route.

  • Can I save money by using flexible dates for flights from Manila to El Nido?

    Yes. Being flexible with your travel dates can save you up to 3% on the Manila to El Nido route. Thursday is the cheapest departure day at C$ 343 round-trip on average, while Saturday is the most expensive at C$ 352, a difference of C$ 10. KAYAK's flexible dates feature shows options up to 3 days before and after your selected dates, making it easier to compare nearby fares.

  • How much time can I save by choosing a different layover airport when travelling from Manila to El Nido?

    Flying via Boracay Godofredo P. Ramos (MPH) gives the shortest average 1-stop total travel time at 4h 27m, compared with 5h 01m via Cebu City Mactan Intl (CEB) and 8h 04m via Bohol–Panglao Intl (TAG).

Your guide to booking Manila to El Nido flights

Get tips on when to book, when to fly, and what to know before your trip.
  • If your dates are flexible, aim for a Thursday departure instead of Saturday. On this route, Thursday flights average C$ 343 – about C$ 10 less than Saturday (3% savings) based on the last 12 months.
  • For the best chance at a low fare, aim to book around 24 weeks before you fly. On this route, that window historically saves about 34% versus last-minute pricing (KAYAK booking data, last 12 months).
  • If you can choose when to travel, plan your Manila to El Nido trip for September. Fares historically average C$ 294 round-trip in that month – typically C$ 115 less than the most expensive month, which is December (based on the last 12 months).
  • If arriving on time is high on your priority list, Cebu Pacific is the strongest pick on this route. 94% of Cebu Pacific flights from Manila to El Nido arrived on time in the past 3 months, slightly above the route's average on-time arrival rate of 88%. When flights on this route do arrive late, the average delay is 1 hour36 minutes, so choosing a carrier with strong on-time performance can make a difference on tight schedules.
  • If you're arriving late at night and need somewhere to stay, check out these hotels close to El Nido Airport.
    - Seda Lio El Nido Palawan
    - Cadlao Resort And Restaurant
    - Golden Monkey Cottages

More options for your flight from Manila to El Nido

Complete your trip to El Nido with a hotel stay or car rental

Hotels in El Nido
Vacations in El Nido