MNL - ENI

C$ 236 Find Cheap Flights from Manila to El Nido – Compare and Save

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Everything you should know

Cheapest round-trip
C$ 381
Typical prices: C$ 331-C$ 553
Multiple Airlines
Sat 17/3Sat 24/3
MNL - ENI • 1 stop
Cheapest one-way flights
C$ 236
Typical prices: C$ 203-C$ 300
Multiple Airlines
Mon 15/1
MNL - ENI • 1 stop
Avoid delays
Cebu Pacific
Most punctual • 94% on-time
Morning
Best time • Fewest delays
Insights
Insights
When to book
22 weeks
in advance
Our data shows that travellers who book at least 22 weeks in advance save around 44% compared to booking last minute.
Insights
Insights
When to travel
September
Cheapest • 29% price drop
February
Most popular
Good to know
+1
Good to know
+1
Top layover airports
Boracay Godofredo P. Ramos (MPH)
Cheapest • Avg C$ 493 (round-trip)
Cebu City Mactan Intl (CEB)
Shortest trip • 5h 12m (one-way)
Insights
Insights
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We hope you enjoy your trip to El Nido!
Flight Deals
Booking Insights
Flight Deals

Cheap Flights from Manila to El Nido (MNL-ENI)

 
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Manila to El Nido

Wed, 17 Mar - Wed, 24 Mar
Multiple Airlines Logo
7:55 a.m. - 12:15 p.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
4h 20m1 stop Bohol–Panglao Intl
Multiple Airlines Logo
8:25 a.m. - 1:15 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
4h 50m1 stop Bohol–Panglao Intl
C$ 381Multiple Airlines
13 hours ago
Sun, 7 Mar - Fri, 12 Mar
Multiple Airlines Logo
12:00 a.m. - 6:00 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 00m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
1:35 p.m. - 6:25 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
4h 50m1 stop Bohol–Panglao Intl
C$ 392Multiple Airlines
3+ days ago
Wed, 13 Jan - Wed, 20 Jan
Multiple Airlines Logo
11:15 p.m. - 6:00 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 45m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
4:40 p.m. - 2:05 a.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
9h 25m1 stop Cebu City Mactan Intl
C$ 405Multiple Airlines
1 day ago
Wed, 3 Mar - Wed, 10 Mar
Multiple Airlines Logo
6:05 a.m. - 10:25 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
4h 20m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
8:25 a.m. - 1:15 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
4h 50m1 stop Bohol–Panglao Intl
C$ 454Multiple Airlines
13 hours ago
Tue, 4 May - Sun, 9 May
Multiple Airlines Logo
12:10 p.m. - 5:00 p.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
4h 50m1 stop Boracay Godofredo P. Ramos
Multiple Airlines Logo
6:50 a.m. - 2:35 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
7h 45m1 stop Cebu City Mactan Intl
C$ 456Multiple Airlines
2 days ago
Tue, 9 Feb - Wed, 10 Feb
Multiple Airlines Logo
12:10 p.m. - 9:15 p.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
9h 05m1 stop Boracay Godofredo P. Ramos
Multiple Airlines Logo
4:40 p.m. - 12:05 a.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
7h 25m1 stop Cebu City Mactan Intl
C$ 492Multiple Airlines
1 day ago
Wed, 2 Dec - Mon, 7 Dec
Multiple Airlines Logo
6:15 p.m. - 6:00 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
11h 45m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
7:55 p.m. - 2:20 a.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
6h 25m1 stop Cebu City Mactan Intl
C$ 499Multiple Airlines
2 days ago
Wed, 17 Feb - Sun, 21 Feb
Multiple Airlines Logo
11:15 p.m. - 6:00 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
6h 45m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
5:50 a.m. - 9:25 p.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
15h 35m1 stop Cebu City Mactan Intl
C$ 502Multiple Airlines
2 days ago
Fri, 5 Feb - Thu, 11 Feb
Multiple Airlines Logo
5:35 a.m. - 5:20 p.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
11h 45m2 stops Boracay Godofredo P. Ramos Angeles City Clark Intl
Multiple Airlines Logo
5:50 a.m. - 9:40 a.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
3h 50m1 stop Cebu City Mactan Intl
C$ 518Multiple Airlines
13 hours ago
Fri, 5 Feb - Thu, 11 Feb
Multiple Airlines Logo
10:30 p.m. - 6:00 a.m.MNL  Manila Ninoy Aquino Intl-ENI El Nido
7h 30m1 stop Cebu City Mactan Intl
Multiple Airlines Logo
5:50 a.m. - 9:40 a.m.ENI  El Nido-MNL Manila Ninoy Aquino Intl
3h 50m1 stop Cebu City Mactan Intl
C$ 521Multiple Airlines
13 hours ago
Booking Insights

Price, demand, and travel trends for Manila to El Nido flights

Use KAYAK data on prices, travel dates, airlines, and seasonal trends to compare options and book flights with more confidence.

What's the cheapest day of the week to fly from Manila to El Nido?

Based on deals KAYAK users found in the last 12 months, Friday is the cheapest day of the week to fly from Manila to El Nido. It's 4% cheaper than the average day, while Saturday is the most expensive, with prices 7% higher.

What is the cheapest month to fly from Manila to El Nido?

•September is the cheapest month to fly from Manila to El Nido at C$ 312 round-trip.
•December (C$ 504) and November (C$ 494) are the most expensive months.
•The price difference between flying in the cheapest and most expensive months is 61% on average.
This is based on KAYAK aggregated and averaged internal data over the past 12 months.

When are flights from Manila to El Nido the cheapest?

Flights from Manila to El Nido are cheapest 22 weeks before departure. Booking in this window typically costs about 44% less than the average last-minute fare (within 2 weeks of the flight), based on KAYAK data.

Find deals

Key details for Manila to El Nido flights

Low season

September

Cheapest flight

C$ 236
Beat the crowds with an average 53% drop in traveller numbers.
The most popular month to fly with an average 63% increase in traveller numbers.
One-way flight from Manila to El Nido

When to book flights from Manila to El Nido

Are your dates flexible? Find out the best times to travel from Manila to El Nido based on our flight data from the last year. Discover the cheapest month and even day to fly.
Estimated round-trip price

Your Manila to El Nido flight questions, answered

Find helpful answers about this route, including flight times, airports, airlines, and booking tips.

  • Which cabin classes can I book on flights from Manila to El Nido?

    Only Economy Class is available on flights from Manila to El Nido.

  • How long does a flight from Manila to El Nido take?

    There are currently no direct flights available from Manila to El Nido. Flights with 1 layover take between 4h 17m and 7h 43m in total, depending on the connection.

  • Do I need a passport to fly from Manila to El Nido?

    No, a passport is not required for this domestic route, but you will need another form of identification, such as a driver's licence.

  • How much should I expect to pay for a Manila to El Nido flight?

    Round-trip flights from Manila to El Nido range from C$ 331 to C$ 553, with an average of C$ 441 over the past 12 months. Anything below C$ 331 counts as a good deal.

  • How expensive are last-minute Manila to El Nido flights?

    Last-minute fares on this route (booked within two weeks of departure) run 30% above the C$ 441 route average. Book 22 weeks before departure for the lowest fares.

  • How much can I save by taking a layover when flying from Manila to El Nido?

    On this route, direct flights are cheaper than layover options on average. Direct fares average C$ 356 round-trip, compared to C$ 493 via a layover through Boracay Godofredo P. Ramos (MPH).

  • Which aircraft model is used most often on flights from Manila to El Nido?

    The Airbus A320-100/200 family is used most often on this route, operated mainly by AirSWIFT and Cebu Pacific. Other aircraft seen on the route include Airbus A330-900neo variants.

  • Have flight prices from Manila to El Nido changed much recently?

    Yes. Based on fares seen in the past 5 days, round-trip prices on this route showed a wide range, from about C$ 381 to C$ 837. That means the highest observed fare was about 2x higher than the lowest one.

  • How are flight prices from Manila to El Nido looking right now?

    One-way fares from Manila to El Nido are currently higher than usual. Average one-way flight prices are about C$ 289, which is 9% above the typical average for this route.

  • Which airports can I use when flying from Manila to El Nido?

    Flights from Manila to El Nido usually depart from Manila Ninoy Aquino Intl (MNL) and arrive at El Nido (ENI).

  • What time of day has the fewest delays on flights from Manila to El Nido?

    Morning flights have the fewest delays on this route, while evening departures tend to have the most.

  • At what point is a flight considered delayed on the route from Manila to El Nido?

    A flight is considered delayed when it departs 15 minutes or more after its scheduled time. This is the standard used by the US Department of Transportation and most airline industry reporting. On the Manila to El Nido route, 12% of flights were delayed in the past three months, with delays averaging 1h 37m.

  • Which airports do connecting flights from Manila to El Nido pass through?

    One-stop flights from Manila to El Nido most commonly connect through:

    • Cebu City Mactan Intl (CEB) – 86% of one-stop connections
    • Boracay Godofredo P. Ramos (MPH) – 12% of one-stop connections
    • Bohol–Panglao Intl (TAG) – 2% of one-stop connections

  • Can I save money by using flexible dates for flights from Manila to El Nido?

    Yes. Flexible dates can save you up to 11% on flights from Manila to El Nido. Friday is the cheapest departure day at C$ 428 round-trip on average, while Saturday is the most expensive at C$ 477, a difference of C$ 49.

    KAYAK's flexible dates feature shows options up to three days before and after your selected dates, making it easier to compare nearby fares.

  • How much time can I save by choosing a different layover airport when travelling from Manila to El Nido?

    Flying via Boracay Godofredo P. Ramos (MPH) gives the shortest average 1-stop total travel time at 4h 17m, compared with 5h 12m via Cebu City Mactan Intl (CEB) and 7h 43m via Bohol–Panglao Intl (TAG).

Your guide to booking Manila to El Nido flights

Get tips on when to book, when to fly, and what to know before your trip.
  • If your dates are flexible, aim for a Friday departure and avoid flying on Saturday. On this route, Friday flights average C$ 428, about C$ 49 less than Saturday fares (10% savings) based on the last 12 months.
  • For the best chance at a low fare, aim to book around 22 weeks before you fly. On this route, that window historically saves about 44% versus last-minute pricing (KAYAK booking data, last 12 months).
  • If you can choose when to travel, plan your Manila to El Nido trip for September. Fares historically average C$ 312 round-trip in that month – typically C$ 192 less than the most expensive month, which is December (based on the last 12 months).
  • For the best chance of arriving on time, fly with Cebu Pacific. Over the past three months, 94% of Cebu Pacific flights from Manila to El Nido arrived on time, slightly above the route average of 88%. When flights on this route arrive late, they're delayed by an average of 1h 37m, so choosing an airline with strong on-time performance can make a difference if you're on a tight schedule.
  • If you're arriving late at night and need somewhere to stay, check out these hotels close to El Nido Airport.

    • Seda Lio El Nido Palawan
    • Cadlao Resort And Restaurant
    • Golden Monkey Cottages

More options for your flight from Manila to El Nido

Complete your trip to El Nido with a hotel stay or car rental

Hotels in El Nido
Vacations in El Nido